A Step-by-Step Procedure to Analyze the Efficacy of siRNA Using Real-Time PCR
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Knockdown of cellular RNA using short interfering RNA has enabled researchers to perform loss-of-function (LOF) experiments
in a wide variety of cell types and model systems. RNA interference techniques and reagents have made possible experiments
that test everything from the analysis of function of single genes to screening for genes that are involved in critical biological
pathways on a genome-wide scale. Although siRNA experiments are generally common practice in research laboratories, it is
still important to keep in mind that many factors can influence efficacy of knockdown. A properly designed siRNA, optimized
protocols of siRNA delivery, and an appropriate and well-optimized readout are all critical parameters for ensuring the success
of your experiment. In this chapter, we provide step-by-step procedures for performing an siRNA knockdown experiment from
cell culture to analysis of knockdown using quantitative real-time PCR.
Affiliation(s): (3) Ambion, Applied Biosystems Inc., Austin, TX, USA
(4) Bio Scientific Corporation, Austin, TX, USA
(4) Bio Scientific Corporation, Austin, TX, USA
Book Title: Post-Transcriptional Gene Regulation
Series: Methods in Molecular Biology | Volume: 419 | Pub. Date: Dec-21-2007 | Page Range: 303-316 | DOI: 10.1007/978-1-59745-033-1_21
Subject: Genetics/Genomics
Key Words: siRNA - transfection - knockdown - RNA isolations - reverse transcription - real-time PCR - Taq Man′ gene expression assays
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